2024
Bast, A., Fruengel, R., De Kock, C., & Oberlaender, M. (2024). Network-neuron interactions underlying sensory responses of layer 5 pyramidal tract neurons in barrel cortex. PLOS Computational Biology, 20(4): e1011468. https://doi.org/10.1371/journal.pcbi.1011468.
Koch, D., Nandan, A. P., Ramesan, G., & Koseska, A. (2024). Biological computations: Limitations of attractor-based formalisms and the need for transients. Biochemical and Biophysical Research Communications, 720: 150069. https://doi.org/10.1016/j.bbrc.2024.150069.
Koch, D., Nandan, A. P., Ramesan, G., Tyukin, I., Gorban, A., & Koseska, A. (2024). Ghost Channels and Ghost Cycles Guiding Long Transients in Dynamical Systems. Physical Review Letters, 133: 047202. https://doi.org/10.1103/PhysRevLett.133.047202.
Kotowska, A. M., Hiramatsu, F., Alexander, M. R., Scurr, D. J., Lightfoot, J. W., & Chauhan, V. M. (2024). Molecular surface chemistry defines nematode development, identity and behaviour. bioRxiv. https://doi.org/10.1101/2024.04.24.590549.
Shirdhankar, R. N., & Malkemper, E. P. (2024). Cognitive maps and the magnetic sense in vertebrates. Current Opinion in Neurobiology, 86: 102880. https://doi.org/10.1016/j.conb.2024.102880.
2023
Bast, A., Fruengel, R., de Kock, C.P.J., and Oberlaender, M. (2023). Interpretable modelling of input-output computations in cortex. bioRxiv, 555249. https://doi.org/10.1101/2023.08.29.555249.
Hiramatsu, F., & Lightfoot, J. W. (2023). Kin-recognition and predation shape collective behaviors in the cannibalistic nematode Pristionchus pacificus. PLoS Genetics, 19(12): e1011056. https://doi.org/10.1371/journal.pgen.1011056.
Vinopal, S., Dupraz, S., Alfadil, E., Pietralla, T., Bendre, S., Stiess, M., … Bradke, F. (2023). Centrosomal microtubule nucleation regulates radial migration of projection neurons independently of polarization in the developing brain. Neuron, 111(8). https://doi.org/10.1016/j.neuron.2023.01.020
2022
Bonnard, E., Liu, J., Zjacic, N., Alvarez, L., & Scholz, M. (2022). Automatically tracking feeding behavior in populations of foraging C. elegans. eLife, 11: e77252. https://doi.org/10.7554/eLife.77252.
Bohmbach, K., Masala, N., Schönhense, E.M., Hill, K., Haubrich, A.N., Zimmer, A., Opitz, T., Beck, H., Henneberger, C. (2022) An astrocytic signaling loop for frequency-dependent control of dendritic integration 2 and spatial learning. Nat Commun 13, 7932. https://doi.org/10.1038/s41467-022-35620-8
Eren, G.G.; Roca, M; Han, Z; Lightfoot, JW (2022). Genomic integration of transgenes using UV irradiation in Pristionchus pacificus. microPublication Biology https://doi.org/10.17912%2Fmicropub.biology.000576
Flores Valle, A., Honnef, R., & Seelig, J. D. (2022). Automated long-term two-photon imaging in head-fixed walking Drosophila. Journal of Neuroscience Methods, 368: 109432. https://doi.org/10.1016/j.jneumeth.2021.109432.
Flores Valle, A., & Seelig, J. D. (2022). A place learning assay for tethered walking Drosophila. Journal of Neuroscience Methods, 378: 109657. https://doi.org/10.1016/j.jneumeth.2022.109657.
Flores Valle, A., & Seelig, J. D. (2022). Axial motion estimation and correction for simultaneous multi-plane two-photon calcium imaging. Biomedical Optics Express, 13(4), 2035-2049. https://doi.org/10.1364/BOE.445775.
Lin, P., LI, C., Flores Valle, A., Wang, Z., Zhang, M., Cheng, R., et al. (2022). Tilt-angle stimulated Raman projection tomography. Optics Express, 30(20), 37112-37123. https://doi.org/10.1364/OE.470527.
Luxem, K., Mocellin, P., Fuhrmann, F., Kürsch, J., Miller, S. R., Palop, J. J., Remy, S., & Bauer, P. (2022). Identifying behavioral structure from deep variational embeddings of animal motion. Communications biology, 5(1), 1267. https://doi.org/10.1038/s42003-022-04080-7
Masala, N., Pofahl, M., Haubrich A.N., Nikbakht, N., Bohmbach, K., Henneberger, C., Golcuk, K., Kelly, T., Beck, H. (2022) Degraded dendritic input feature detection underlies spatial memory deficits in epilepsy. Brain, 146(6), 2399–2417, https://doi.org/10.1093/brain/awac455
Monsees, A., Voit, K.-M., Wallace, D. J., Sawinski, J., Leks, E., Scheffler, K., et al. (2022). Estimation of skeletal kinematics in freely moving rodents. Nature Methods. https://doi.org/10.1038/s41592-022-01634-9.
Royero, P., Quatraccioni, A., Fruengel, R., Silva, M. H., Bast, A., Ulas, T., et al. (2022). Circuit-selective cell-autonomous regulation of inhibition in pyramidal neurons by Ste20-like kinase. Cell Reports, 41(10): 111757. https://doi.org/10.1016/j.celrep.2022.111757.
Schelski, M., & Bradke, F. (2022). Microtubule retrograde flow retains neuronal polarization in a fluctuating state. Science advances, 8(44), eabo2336. https://doi.org/10.1126/sciadv.abo2336
2021
de Kock, C. P., Pie, J., Pieneman, A. W., Mease, R. A., Bast, A., Guest, J. M., Oberlaender, M., Mansvelder, H. D., & Sakmann, B. (2021). High-frequency burst spiking in layer 5 thick-tufted pyramids of rat primary somatosensory cortex encodes exploratory touch. Communications Biology, 4(1). https://doi.org/10.1038/s42003-021-02241-8
Flores Valle, A., Gonçalves, P. J., & Seelig, J. D. (2021). Integration of sleep homeostasis and navigation in drosophila. PLOS Computational Biology, 17(7). https://doi.org/10.1371/journal.pcbi.1009088
Hückesfeld, S., Schlegel, P., Miroschnikow, A., Schoofs, A., Zinke, I., Haubrich, A. N., Schneider-Mizell, C. M., Truman, J. W., Fetter, R. D., Cardona, A., & Pankratz, M. J. (2021). Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in drosophila. ELife, 10. https://doi.org/10.7554/elife.65745
Iyer, A. A., & Briggman, K. L. (2021). Amphibian behavioral diversity offers insights into evolutionary neurobiology. Current Opinion in Neurobiology, 71, 19–28. https://doi.org/10.1016/j.conb.2021.07.015
Komorowska-Müller, J. A., Rana, T., Olabiyi, B. F., Zimmer, A., & Schmöle, A.-C. (2021). Cannabinoid receptor 2 alters social memory and microglial activity in an age-dependent manner. Molecules, 26(19), 5984. https://doi.org/10.3390/molecules26195984
Komorowska-Müller, J. A., Ravichandran, K. A., Zimmer, A., & Schürmann, B. (2021). Cannabinoid receptor 2 deletion influences social memory and synaptic architecture in the hippocampus. Scientific Reports, 11(1). https://doi.org/10.1038/s41598-021-96285-9
Minge, D., Domingos, C., Unichenko, P., Behringer, C., Pauletti, A., Anders, S., Herde, M. K., Delekate, A., Gulakova, P., Schoch, S., Petzold, G. C., & Henneberger, C. (2021). Heterogeneity and development of fine astrocyte morphology captured by diffraction-limited microscopy. Frontiers in Cellular Neuroscience, 15. https://doi.org/10.3389/fncel.2021.669280
Mocellin, P., & Mikulovic, S. (2021). The role of the medial septum—associated networks in controlling locomotion and motivation to move. Frontiers in Neural Circuits, 15. https://doi.org/10.3389/fncir.2021.699798
Pofahl, M., Nikbakht, N., Haubrich, A. N., Nguyen, T. M., Masala, N., Distler, F. J., Braganza, O., Macke, J. H., Ewell, L. A., Golcuk, K., & Beck, H. (2021). Synchronous activity patterns in the dentate gyrus during immobility. ELife, 10. https://doi.org/10.7554/elife.65786
Reusch, N., Ravichandran, K. A., Olabiyi, B. F., Komorowska‐Müller, J. A., Hansen, J. N., Ulas, T., Beyer, M., Zimmer, A., & Schmöle, A. C. (2021). Cannabinoid receptor 2 is necessary to induce toll‐like receptor‐mediated microglial activation. Glia. https://doi.org/10.1002/glia.24089
Schmidt, S., Pothmann, L., Müller‐Komorowska, D., Opitz, T., Soares da Silva, P., & Beck, H. (2021). Complex effects of eslicarbazepine on inhibitory micro networks in chronic experimental epilepsy. Epilepsia, 62(2), 542–556. https://doi.org/10.1111/epi.16808
Schoch, S., Quatraccioni, A., Robens, B. K., Maresch, R., van Loo, K. M. J., Cases-Cunillera, S., Kelly, T., Opitz, T., Borger, V., Dietrich, D., Pitsch, J., Beck, H., & Becker, A. J. (2021). STE20-like kinase is critical for inhibitory synapse maintenance and its deficiency confers a developmental dendritopathy. The Journal of Neuroscience, 41(39), 8111–8125. https://doi.org/10.1523/jneurosci.0352-21.2021
Speiser, A., Müller, L.-R., Hoess, P., Matti, U., Obara, C. J., Legant, W. R., Kreshuk, A., Macke, J. H., Ries, J., & Turaga, S. C. (2021). Deep learning enables fast and dense single-molecule localization with high accuracy. Nature Methods, 18(9), 1082–1090. https://doi.org/10.1038/s41592-021-01236-x
2020
Bertan, F., Wischhof, L., Sosulina, L., Mittag, M., Dalügge, D., Fornarelli, A., Gardoni, F., Marcello, E., Di Luca, M., Fuhrmann, M., Remy, S., Bano, D., & Nicotera, P. (2020). Loss of ryanodine receptor 2 impairs neuronal activity-dependent remodeling of dendritic spines and triggers compensatory neuronal hyperexcitability. Cell Death & Differentiation, 27(12), 3354–3373. https://doi.org/10.1038/s41418-020-0584-2
Braganza, O., Mueller-Komorowska, D., Kelly, T., & Beck, H. (2020). Quantitative properties of a feedback circuit predict frequency-dependent pattern separation. ELife, 9. https://doi.org/10.7554/elife.53148
Egger, R., Narayanan, R. T., Guest, J. M., Bast, A., Udvary, D., Messore, L. F., Das, S., de Kock, C. P. J., & Oberlaender, M. (2020). Cortical output is gated by horizontally projecting neurons in the deep layers. Neuron, 105(1). https://doi.org/10.1016/j.neuron.2019.10.011
Herde, M. K., Bohmbach, K., Domingos, C., Vana, N., Komorowska-Müller, J. A., Passlick, S., Schwarz, I., Jackson, C. J., Dietrich, D., Schwarz, M. K., & Henneberger, C. (2020). Local efficacy of glutamate uptake decreases with synapse size. Cell Reports, 32(12), 108182. https://doi.org/10.1016/j.celrep.2020.108182
Komorowska-Müller, J. A., & Schmöle, A.-C. (2020). CB2 receptor in microglia: The guardian of self-control. International Journal of Molecular Sciences, 22(1), 19. https://doi.org/10.3390/ijms22010019
Müller, F. E., Schade, S. K., Cherkas, V., Stopper, L., Breithausen, B., Minge, D., Varbanov, H., Wahl‐Schott, C., Antoniuk, S., Domingos, C., Compan, V., Kirchhoff, F., Henneberger, C., Ponimaskin, E., & Zeug, A. (2020). Serotonin receptor 4 regulates hippocampal astrocyte morphology and function. Glia, 69(4), 872–889. https://doi.org/10.1002/glia.23933
Müller-Komorowska, D., Opitz, T., Elzoheiry, S., Schweizer, M., Ambrad Giovannetti, E., & Beck, H. (2020). Nonspecific expression in limited excitatory cell populations in interneuron-targeting Cre-driver lines can have large functional effects. Frontiers in Neural Circuits, 14. https://doi.org/10.3389/fncir.2020.00016
2019
Flores Valle, A., & Seelig, J. D. (2019). Two-photon bessel beam tomography for fast volume imaging. Optics Express, 27(9), 12147. https://doi.org/10.1364/oe.27.012147
2018
Berens, P., Freeman, J., Deneux, T., Chenkov, N., McColgan, T., Speiser, A., Macke, J. H., Turaga, S. C., Mineault, P., Rupprecht, P., Gerhard, S., Friedrich, R. W., Friedrich, J., Paninski, L., Pachitariu, M., Harris, K. D., Bolte, B., Machado, T. A., Ringach, D., … Bethge, M. (2018). Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology, 14(5). https://doi.org/10.1371/journal.pcbi.1006157
Dalügge, D., & Remy, S. (2018). Human cortical dendrites: Stretched to perform better? Cell, 175(3), 635–637. https://doi.org/10.1016/j.cell.2018.09.052
Guest, J. M., Seetharama, M. M., Wendel, E. S., Strick, P. L., & Oberlaender, M. (2018). 3D reconstruction and standardization of the rat facial nucleus for precise mapping of Vibrissal Motor Networks. Neuroscience, 368, 171–186. https://doi.org/10.1016/j.neuroscience.2017.09.031
2017
Rojas-Piloni, G., Guest, J. M., Egger, R., Johnson, A. S., Sakmann, B., & Oberlaender, M. (2017). Relationships between structure, in vivo function and long-range axonal target of cortical pyramidal tract neurons. Nature Communications, 8(1). https://doi.org/10.1038/s41467-017-00971-0
Schelski, M., & Bradke, F. (2017). Neuronal polarization: From spatiotemporal signaling to cytoskeletal dynamics. Molecular and Cellular Neuroscience, 84, 11–28. https://doi.org/10.1016/j.mcn.2017.03.008
2016
Justus, D., Dalügge, D., Bothe, S., Fuhrmann, F., Hannes, C., Kaneko, H., Friedrichs, D., Sosulina, L., Schwarz, I., Elliott, D. A., Schoch, S., Bradke, F., Schwarz, M. K., & Remy, S. (2016). Glutamatergic synaptic integration of locomotion speed via septoentorhinal projections. Nature Neuroscience, 20(1), 16–19. https://doi.org/10.1038/nn.4447